Working with view configs

Functions and R6 classes for creating and manipulating Vitessce view config objects.

VitessceConfig$from_list

Create a new Vitessce Config from a list A helper function to construct a new VitessceConfig object based on an existing config in a list format.

VitessceConfig$from_object

Create a new Vitessce Config from a data object A helper function to construct a new VitessceConfig object based on an object containing single-cell or imaging data.

VitessceConfig

VitessceConfig Class

VitessceConfigCoordinationScope

VitessceConfigCoordinationScope Class

VitessceConfigDataset

VitessceConfigDataset Class

VitessceConfigDatasetFile

VitessceConfigDatasetFile Class

VitessceConfigView

VitessceConfigView Class

hconcat()

Horizontally concatenate views

vconcat()

Vertically concatenate views

Constants for view configs

Lists which map keys to constant strings for use as parameters to the above view config functions.

DataType

Enumeration of Data Type values

FileType

Enumeration of File Type values

Component

Enumeration of Component values

CoordinationType

Enumeration of Coordination Type values

Widgets

Functions for creating Vitessce htmlwidgets.

vitessce_output() render_vitessce()

Shiny bindings for vitessce

vitessce_widget()

Vitessce Widget

Dataset wrapper classes

Wrapper classes for automating the data conversion process for Vitessce.

AbstractWrapper

AbstractWrapper Class

SeuratWrapper

SeuratWrapper Class