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Working with view configs

Functions and R6 classes for creating and manipulating Vitessce view config objects.

VitessceConfig$from_list
Create a new Vitessce Config from a list A helper function to construct a new VitessceConfig object based on an existing config in a list format.
VitessceConfig$from_object
Create a new Vitessce Config from a data object A helper function to construct a new VitessceConfig object based on an object containing single-cell or imaging data.
VitessceConfig
VitessceConfig Class
VitessceConfigCoordinationScope
VitessceConfigCoordinationScope Class
VitessceConfigDataset
VitessceConfigDataset Class
VitessceConfigDatasetFile
VitessceConfigDatasetFile Class
VitessceConfigView
VitessceConfigView Class
hconcat()
Horizontally concatenate views
vconcat()
Vertically concatenate views

Constants for view configs

Lists which map keys to constant strings for use as parameters to the above view config functions.

DataType
Enumeration of Data Type values
FileType
Enumeration of File Type values
Component
Enumeration of Component values
CoordinationType
Enumeration of Coordination Type values

Widgets

Functions for creating Vitessce htmlwidgets.

vitessce_output() render_vitessce()
Shiny bindings for vitessce
vitessce_widget()
Vitessce Widget

Dataset wrapper classes

Wrapper classes for automating the data conversion process for Vitessce.

AbstractWrapper
AbstractWrapper Class
SeuratWrapper
SeuratWrapper Class
MultiImageWrapper
MultiImageWrapper Class
OmeTiffWrapper
OmeTiffWrapper Class