Vitessce is a visual integration tool for exploration of spatial single-cell experiments. To learn more about the features of Vitessce, please visit our `core docs `_. Getting Started ################ The ``vitessce`` Python package includes: * **Vitessce as a Jupyter Widget** * Use Vitessce directly within Jupyter Notebook or Jupyter Lab as an interactive widget * **View config API** * Create and edit Vitessce configurations using Python object-oriented syntax * **Data preparation** * Use our data conversion wrapper classes to process data stored in common single-cell file types including AnnData and SnapATAC. Installation ------------- Installation requires Python 3.9 or greater. Install from `PyPI `_: .. code-block:: bash pip install vitessce[all] Widget Compatibility -------------------- The Vitessce widget is compatible with the following interactive Python platforms: * JupyterLab ``>=3.0.0`` * Jupyter Notebook (classic) ``>=1.0.0`` .. toctree:: :maxdepth: 2 :hidden: self widget_examples data_examples api_config api_data data_options screenshots Indices and tables ================== * :ref:`genindex` * :ref:`modindex` * :ref:`search`