Vitessce is a visual integration tool for exploration of spatial single-cell experiments. To learn more about the features of Vitessce, please visit our core docs.
vitessce Python package includes:
Vitessce as a Jupyter Widget
Use Vitessce directly within Jupyter Notebook or Jupyter Lab as an interactive widget
View config API
Create and edit Vitessce configurations using Python object-oriented syntax
Use our data conversion wrapper classes to process data stored in common single-cell file types including AnnData and SnapATAC.
Installation requires Python 3.9 or greater. Install from PyPI:
pip install vitessce[all]
The Vitessce widget is compatible with the following interactive Python platforms:
Jupyter Notebook (classic)